Search Results - "Phylogenetics"

Phylogenetic Analysis of West Nile Virus, Nuevo Leon State, Mexico by Blitvich, Bradley J., Fernández Salas, Ildefonso, Contreras Cordero, Juan Francisco, Loroño Pino, María Alba, Marlenee, Nicole L., Díaz, Francisco J., González Rojas, José Ignacio, Obregón Martínez, Nelson, Chiu García, Jorge A., Black, William C., Beaty, Barry J.

“…Nucleotide sequencing and phylogenetic analysis of the premembrane and envelope genes showed that the virus was most closely related to West Nile virus isolates collected in Texas in 2002.…”
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High Intraspecific Genetic Diversity of Nocardia brasiliensis, a Pathogen Responsible for Cutaneous Nocardiosis Found in France: Phylogenetic Relationships by Using sod and hsp65 Genes by Kosova Maali, D., Bergeron, E., Maali, Y., Durand, T., Gonzalez, J., Mouniée, D., Sandoval Trujillo, H., Boiron, P., Salinas Carmona, Mario César, Rodriguez Nava, V.

“…We analyze 36 indigenous cases of N. brasiliensis that happened in France. Phylogenetic analysis targeting rrs gene showednorobustnessatphylogeneticnodeslevel.However,theuseofaconcatenationofhsp65andsodAgenesshowedthatthe testedstrainssurprisinglyrankedin3well-definedgenotypes.Genotypes2and3werephylogeneticallyclosertoeachotherand bothdivergedfromgenotype1sustainedbyahighbootstrapof81%.Thislastgenotypehostsallthecasesofpulmonaryforms(3), the sole cerebral form, and almost all the cases of immunocompromised patients (3 out of 4). …”
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Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican transition zone and support the recognition of a new genus by Blair, Christopher, Bryson Jr., Robert W.

“…Similar topologies were inferred from coalescent analyses in Bayesian Phylogenetics and Phylogeography and SVDquartets, albeit with lower support for some nodes. …”
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The systematics of the Mexican populations of Macrobrachium digueti (Bouvier, 1895) (Decapoda: Caridea: Palaemonidae) by García Velazco, Humberto, Maeda Martínez, Alejandro M., Obregón Barboza, Hortencia, Campos Torres, Oliva, Murugan, Gopal

“…Key Words: Baja California Peninsula, digueti subgroup, olfersii subgroup, Pacific slope, phylogenetics, systematics, 16S gene, COI gene…”
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Germinación, facilitación y competencia entre plantas del noreste de México y su relación con la filogenia. by Marroquín Castillo, Jonathan Jesús

“…In the present investigation, we tested whether individuals of phylogenetically distant species are closer than the phylogenetically closest ones, in Microphyllus Desert Scrubland, Pine-Oak Forests and Tamaulipan Thornscrub in northeastern Mexico. …”
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Germinación, facilitación y competencia entre plantas del noreste de México y su relación con la filogenia. by Marroquín Castillo, Jonathan Jesús

“…In the present investigation, we tested whether individuals of phylogenetically distant species are closer than the phylogenetically closest ones, in Microphyllus Desert Scrubland, Pine-Oak Forests and Tamaulipan Thornscrub in northeastern Mexico. …”
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Molecular evolution and expression profile of the chemerine encoding gene RARRES2 in baboon and chimpanzee by González Álvarez, Rafael, Garza Rodríguez, María de Lourdes, Delgado Enciso, Iván, Treviño Alvarado, Víctor Manuel, Canales del Castillo, Ricardo, Martínez de Villarreal, Laura Elia, Lugo Trampe, Ángel, Tejero, María Elizabeth, Schlabritz Loutsevitch, Natalia E., Rocha Pizaña, María del Refugio, Cole, Shelley A., Reséndez Pérez, Diana, Moises Alvarez, Mario, Comuzzie, Anthony G., Barrera Saldaña, Hugo Alberto, Garza Guajardo, Raquel, Barboza Quintana, Oralia, Rodríguez Sánchez, Irám Pablo

“…Expression profiles of the RARRES2 gene are similar in baboons and chimpanzees and are also phylogenetically related.…”
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Dissemination of different sequence types lineages harboring blaCTX-M-15 among uropathogenic Escherichia coli in Kerman, Iran by Kalantar Neyestanaki, Davood, Mansouri, Shahla, Kandehkar Ghahraman, Mohammad Reza, Tabatabaeifar, Fatemehalsadat, Hashemizadeh, Zahra

“…Antimicrobial susceptibility testing, ESBLs, AmpC production and biofilm formation were performed by phenotypic methods. Phylogenetic groups, resistance and virulence genes were detected. …”
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High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis by Arocha Garza, Héctor Fernando, Canales del Castillo, Ricardo, Eguiarte, Luis E., Souza, Valeria, De la Torre Zavala, Susana

“…The 16S rDNA of putative Actinobacteria were sequenced using both bacteria universal and phylum-specific primer pairs. Phylogenetic reconstructions were performed to analyze OTUs clustering and taxonomic identification of the isolates in an evolutionary context, using validated type species of Streptomyces from previously phylogenies as a reference. …”
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High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis by Arocha Garza, Héctor Fernando, Canales del Castillo, Ricardo, Eguiarte, Luis E., Souza, Valeria, De la Torre Zavala, Susana

“…The 16S rDNA of putative Actinobacteria were sequenced using both bacteria universal and phylum-specific primer pairs. Phylogenetic reconstructions were performed to analyze OTUs clustering and taxonomic identification of the isolates in an evolutionary context, using validated type species of Streptomyces from previously phylogenies as a reference. …”
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Estudio taxonómico y filogenético del género Gyromitra (Fungi, Ascomycotina, Pezizales) by Medel Ortiz, Rosario

“…Abstract This study presents the results obtained so far, from a taxonomical and phylogenetical study inferred from a morphological data set. …”
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Estudio taxonómico y filogenético del género Gyromitra (Fungi, Ascomycotina, Pezizales) by Medel Ortiz, Rosario

“…Abstract This study presents the results obtained so far, from a taxonomical and phylogenetical study inferred from a morphological data set. …”
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West nile virus isolation in human and mosquitoes, Mexico by Elizondo Quiroga, Darwin, Davis, Todd C., Fernández Salas, Ildefonso, Escobar López, Román, Velasco, Dolores, Soto, Lourdes Cecilia, Aviles, Magaly, Elizondo Quiroga, Armando Erick, González Rojas, José Ignacio, Contreras Cordero, Juan Francisco, Guzman, Hilda, Travassos Da Rosa, Amelia, Blitvich, Bradley J., Beaty, Barry J., Barret, Alan, Tes, Robert B.

“…We report the first isolations of WNV from a sick person and from a pool of Culex quinquefasciatus mosquitoes and describe their phylogenetic relationship to other representative WNV strains from the United States and Mexico.…”
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Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae by Benjak, Andrej, Avanzi, Charlotte, Singh, Pushpendra, Loiseau, Chloé, Girma, Selfu, Busso, Philippe, Fontes, Amanda N. Brum, Miyamoto, Yuji, Namisato, Masako, Bobosha, Kidist, Salgado, Claudio G., Da Silva, Moisés B., Bouth, Raquel C., Frade, Marco A. C., Filho, Fred Bernardes, Barreto, Josafá G., Nery, José A. C., Bührer Sékula, Samira, Lupien, Andréanne, Al Samie, Abdul R., Al Qubati, Yasin, Alkubati, Abdul S., Bretzel, Gisela, Vera Cabrera, Lucio, Sakho, Fatoumata, Johnson, Christian R., Kodio, Mamoudou, Fomba, Abdoulaye, Sow, Samba O., Gado, Moussa, Konaté, Ousmane, Stefani, Mariane M. A., Penna, Gerson O., Suffys, Philip N., Sarno, Euzenir Nunes, Moraes, Milton O., Rosa, Patricia S., Baptista, Ida M. F. Dias, Spencer, John S., Aseffa, Abraham, Matsuoka, Masanori, Kai, Masanori, Cole, Stewart T.

“…Here, we obtain M. leprae genome sequences from DNA extracted directly from patients’ skin biopsies using a customized protocol. Comparative and phylogenetic analysis of 154 genomes from 25 countries provides insight into evolution and antimicrobial resistance, uncovering lineages and phylogeographic trends, with the most ancestral strains linked to the Far East. …”
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Molecular Identification, Antifungal Susceptibility, and Geographic Origin of Clinical Strains of Sporothrix schenckii Complex in Mexico by Rojas, Olga, Bonifaz, Alexandro, Campos, Christian, Treviño Rangel, Rogelio de Jesús, González Álvarez, Rafael, González González, Gloria María

“…This study revealed four clades of S. schenckii sensu stricto by phylogenetic analysis. Furthermore, we report one case of S. globosa isolated from human origin from the North of Mexico.…”
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Genetic isolation by distance among Aedes aegypti populations along the northeastern coast of Mexico. by Fernández Salas, Ildefonso, Gorrochótegui Escalante, Norma, Black, William C., Beaty, Barry J., Muñoz, María de Lourdes

“…Seven mitochondrial haplotypes were detected and phylogenetic analysis identified two well-supported clades. …”
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Mutation Distribution in the NSP4 Protein in Rotaviruses Isolated from Mexican Children with Moderate to Severe Gastroenteritis by González Ochoa, Guadalupe, Menchaca, Griselda, Hernández, Carlos, Rodríguez, Cristina, Tamez, Reyes, Contreras, Juan

“…The severity analysis showed that 13 (26%) cases had mild gastroenteritis, 23 (46%) moderate gastroenteritis and 14 (28%) severe. NSP4 phylogenetic analysis showed three clusters within the genotype E1. …”
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Caracterización genética de cepas de parvovirus canino presentes en el área metropolitana de Monterrey, Nuevo León by Cedillo Rosales, Domenica

“…Interestingly, a single phylogenetic group separated from the rest of the groups previously reported in subtype CPV2c was detected. …”
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Caracterización genética de cepas de parvovirus canino presentes en el área metropolitana de Monterrey, Nuevo León by Cedillo Rosales, Domenica

“…Interestingly, a single phylogenetic group separated from the rest of the groups previously reported in subtype CPV2c was detected. …”
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A new parrot taxon from the Yucatán Peninsula, Mexico—its position within genus Amazona based on morphology and molecular phylogeny by Silva, Tony, Guzmán, Antonio, Urantówka, Adam D., Mackiewicz, Paweł

“…In contrast to this, the phylogenetic tree based on mitochondrial markers shows that this parrot groups with strong support within A. albifrons from Central America, which would suggest that it is a subspecies of A. albifrons. …”
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